Release Notes#

0.3.26 - 2024-06-27#

Added#

  • Dark theme logo for sphinx documentation.

  • Added the pickleshare package to dev dependency group to fix ipython directive in sphinx documentation.

Changed#

  • Pinned sphinx-autodoc to v3.0.0 and numpy to v1.26.4 in documentation-publish.yml to fix the API documentation build.

  • Removed unused documentation dependencies from dev group.

0.3.25 - 2024-06-06#

Added#

  • Added PySpark to TEEHR-HUB (including openjdk-17-jdk and jar files)

Changed#

  • None

0.3.24 - 2024-05-29#

Added#

  • Added metrics documentation to the Sphinx documentation.

Changed#

  • None

0.3.23 - 2024-05-28#

Added#

  • None

Changed#

  • Docstring updates in duckdb_database.py.

  • Changelog update for 0.3.22.

  • Updates insert_attributes() in duckdb_database.py to better handle None/Null attribute units.

  • Test updates in convert.py.

0.3.22 - 2024-05-22#

Added#

  • None

Changed#

  • Cleaned up the DuckDB* classes. Don’t think any public interfaces changed.

  • Import of DuckDBDatabase, DuckDBDatabaseAPI, and DuckDBJoinedParquet now use from teehr.classes import DuckDBDatabase, DuckDBDatabaseAPI, DuckDBJoinedParquet

  • the calculate_field` method was renamed to insert_calculated_field`

0.3.21 - 2024-05-21#

Added#

  • Added the DuckDBJoinedParquet class for metric queries on pre-joined parquet files.

  • Added the DuckDBBase class for common methods between the DuckDBDatabase, DuckDBAPI, and DuckDBJoinedParquet classes.

Changed#

  • Renamed the database directory to classes.

  • Renamed the teehr_dataset.py to teehr_duckdb.py.

  • Renamed the TEEHRDatasetDB and TEEHRDatasetAPI classes to DuckDBDatabase and DuckDBAPI respectively.

  • Removed lead_time and absolute_value from joined table

0.3.20 - 2024-05-18#

Added#

  • None

Changed#

  • Update queries to accept a list of paths for example, primary_filepath and secondary_filepath Includes get_metrics(), get_joined_timeseries(), get_timeseries(), and get_timeseries_chars()

0.3.19 - 2024-05-18#

Added#

  • None

Changed#

  • Update SQL queries to allow reference_time to be NULL.

  • Updated tests for NULL reference_time

0.3.18 - 2024-05-10#

Added#

  • Added documentation regarding best practices for specifying the chunk_by parameter when fetching NWM retrospective and USGS data.

Changed#

  • Fixed a bug in the NWM retrospective grid loading weighted average calculation.

  • Changed the method of fetching NWM gridded data to read only a subset of the grid (given by the row/col bounds from the weights file) into memory rather than the entire grid.

  • Removed ‘day’ and ‘location_id’ chunk_by options to reduce redundant data transfer costs.

0.3.17 - 2024-04-22#

Added#

  • None

Changed#

  • Dropped “Z” from the file name in the NWM loading functions, adding a note in the docstrings that all times are in UTC.

  • Changed data type of zonal_weights_filepath to Union[str, Path] in nwm_grids.py.

  • Fixed SettingWithCopyWarning in NWM grid loading.

  • Fixed the end_date in NWM retrospective loading to include the entirety of the last day and not fail when last available day is specfified.

  • Removed “elevation”, “gage_id”, “order” from NWM v3.0 retrospective point loading.

0.3.16 - 2024-04-11#

Added#

  • Adds a few new metrics to the queries: * annual_peak_relative_bias * spearman_correlation * kling_gupta_efficiency_mod1 * kling_gupta_efficiency_mod2

Changed#

  • None

0.3.15 - 2024-04-08#

Added#

  • location_id_prefix as an optional argument to generate_weights_file() to allow for the prefixing of the location ID with a string.

Changed#

  • Updated the NWM operational and retrospective grid loading functions so that the location ID as defined in the zonal weights file is used as the location ID in the output parquet files.

0.3.14 - 2024-03-29#

Added#

  • relative_bias

  • multiplicative_bias

  • mean_squared_error

  • mean_absolute_relative_error

  • pearson_correlation

  • r_squared

  • nash_sutcliffe_efficiency_normalized

Changed#

  • mean_error (rename current bias to mean_error)

  • mean_absolute_error (rename current mean_error to mean_absolute_error)

0.3.13 - 2024-03-22#

Added#

  • None

Changed#

  • Updated from Enum to StrEnum and added a fix for backwards incompatibility described here: https://tomwojcik.com/posts/2023-01-02/python-311-str-enum-breaking-change. This is required to support both python 3.10 and python 3.11.

  • Updated TEEHR-HUB to Python 3.11 and pangeo/pangeo-notebook:2024.03.13

  • Made all packages that use YYYY.MM.DD versioning >= instead of ^ in pyproject.toml

0.3.12 - 2024-03-22#

Added#

  • None

Changed#

  • Changed the chunking method for USGS and NWM retrospective data loading to iterate over pandas period_range rather than using groupby or date_range to fix a bug when fetching data over multiple years.

0.3.11 - 2024-03-19#

Added#

  • None

Changed#

  • Downgraded required Dask version to dask = “^2023.8.1” to match pangeo/pangeo-notebook:2023.09.11

0.3.10 - 2024-03-07#

Added#

  • Added test_zonal_mean_results.py

Changed#

  • Fixed the calculation of the zonal mean of pixel values in compute_zonal_mean() so it caculates the weighted average (divides by the sum of weight values).

  • Updated grid loading tests and data to reflect the fixed method.

0.3.9 - 2024-02-15#

Added#

  • Adds sphinx documentation framework and initial docs.

  • The documentation-publish.yml workflow is set to build the docs and push to github pages on every tag.

  • The pre-commit-config.yml github hook runs on each commit and checks docstring formatting, trailing whitespaces, and the presence of large files.

  • Added documenation-related python dependencies to [tool.poetry.group.dev.dependencies]

Changed#

  • Example notebooks have been moved to docs/sphinx/user_guide/notebooks.

  • The CHANGELOG.md is now the index.rst file in docs/sphinx/changelog.

  • The CONTRIBUTE.md and release_process.md files now part of the index.rst file in docs/sphinx/development.

  • The data_models.md and queries.md are now the data_models.rst and queries.rst files in docs/sphinx/getting_started.

0.3.8 - 2024-02-14#

Added#

  • Adds logging with a NullHandler() that can be implemented by the parent app using teehr.

0.3.7 - 2024-02-09#

Changed#

  • Upgraded pandas to ^2.2.0

  • Changed unit=”H” in pandas.time_delta to unit=”h”

  • Updated assert statements in test_weight_generation.py

0.3.6 - 2024-02-07#

Added#

  • Adds an exception to catch an error when a corrupted file is encountered while building the Kerchunk reference file using SingleHdf5ToZarr.

  • The behavior determining whether to raise an exception is controlled by the ignore_missing_file flag.

0.3.5 - 2023-12-18#

Added#

  • Adds additional chunking methods for USGS and NWM retrospective loading to allow week, month and year chunking.

  • Adds mean areal summaries for NWM retrospective gridded forcing variables

  • Adds NWM v3.0 to retrospective loading

Changed#

  • Fixes USGS loading to include last date of range

  • Removes extra fields from v2.1 retro output

0.3.4 - 2023-12-18#

Added#

  • Adds the read_only argument to the query method in the TEEHRDatasetDB class with default values specified in the query methods.

Changed#

  • Establishes a read-only database connection as a class variable to the TEEHRDatasetAPI class so it can be re-used for each class instance.

0.3.3 - 2023-12-13#

Added#

  • Adds get_joined_timeseries method to TEEHR Dataset classes.

Changed#

  • Updated validation fields in the TimeSeriesQuery pydantic model to accept only selected fields rather than existing database fields.

  • Updated function argument typing in queries/utils.py to be more explicit

0.3.2 - 2023-12-12#

Added#

  • None

Changed#

  • Fixed the bias metric so that it is sum(secondary_value - primary_value)/count(*) instead of sum(primary_value - secondary_value)/count(*) which resulted in the wrong sign.

  • Changed primary_max_value_time, secondary_max_value_time and max_value_timedelta queries to use built-in functions instead of CTEs. This improves speed significantly.

  • Fixed bug in queries when filtering by configuration, measurement_unit and variable.

  • Refactored join_attributes in TEEHRDatasetDB to better handle attributes with no units.

  • Refactored create_join_and_save_timeseries_query queries so that the de-duplication CTE is after the intial join CTE for improved performance.

  • Changes default list of order_by variables in insert_joined_timeseries to improve query performance

0.3.1 - 2023-12-08#

Added#

  • Adds a boolean flag to parquet-based metric query control whether or not to de-duplicate.

  • Adds a test primary timeseries file including duplicate values for testing.

Changed#

  • Refactored parquet-based get_metrics and get_joined_timeseries queries to that so that the de-duplication CTE is after the intial join CTE for improved performance.

0.3.0 - 2023-12-08#

Added#

  • Adds a dataclass and database that allows preprocessing of joined timeseries and attributes as well as the addition of user defined functions.

  • Adds an initial web service API that serves out timeseries and metrics along with some other supporting data.

  • Adds an initial interactive web application using the web service API.

Changed#

  • Switches to poetry to manage Python venv

  • Upgrades to Pydantic 2+

  • Upgrades to Pangeo image pangeo/pangeo-notebook:2023.09.11

0.2.9 - 2023-12-08#

Added#

  • Three options related to kerchunk jsons * local - (default) previous behavior, manually creates the jsons based on GCS netcdf files using Kerchunk’s SingleHdf5ToZarr. Any locally existing files will be used before creating new jsons from the remote store. * remote - use pre-created jsons, skipping any that do not exist within the specified time frame. Jsons are read directly from s3 using fsspec * auto - use pre-created jsons, creating any that do not exist within the specified time frame

  • Adds nwm_version (nwm22 or nwm30) and data_source (GCS, NOMADS, DSTOR - currently on GCS implemented) as loading arguments

Changed#

  • Combines loading modules into one directory loading/nwm

  • Updates to loading example notebooks

  • Updates to loading tests

0.2.8 - 2023-11-14#

Added#

  • NWM v3.0 data loading and configuration models

  • Added check for duplicate rows in get_metrics and get_joined_timeseries queries (#69)

  • Added control for overwrite file behavior in loading (#77)

  • Significant refactor of the loading libraries

  • Added ability to select which retrospective version to download (v2.0 or v2.1) (#80)

Changed#

  • Fixed NWM pydantic configurations models for v2.2

  • Refactored models/loading directory

0.2.7 - 2023-09-14#

Added#

  • More testing to NWM point and grid loading functions

0.2.6 - 2023-09-14#

Changed#

  • Fixed some sloppy bugs in nwm_grid_data.py

Added#

  • ValueError handling when encountering a corrupt zarr json file

0.2.5 - 2023-09-11#

Changed#

  • None

Added#

  • Added ability to use holoviz export to TEEHR-HUB:

    • Installed firefox (and a bunch of dependencies) to the Docker container (using apt)

    • Installed selenium and the geckodriver using conda

0.2.4 - 2023-08-30#

Changed#

  • Behavior of loading when encountering missing files

  • Renamed field zone to location_id in nwm_grid_data.py and generate_weights.py

Added#

  • The boolean flag ignore_missing_files to point and grid loading to determine whether to fail or continue on missing NWM files

  • Added a check to skip locally existing zarr json files when loading NWM data

0.2.3 - 2023-08-23#

Changed#

  • Removed pyarrow from time calculations in nwm_point_data.py loading due to windows bug

  • Updated output file name in nwm_point_data.py to include forecast hour if process_by_z_hour=False

0.2.2 - 2023-08-23#

Added#

  • nodejs to the jupyterhub build so the extensions will load (not 100% sure this was needed)

Changed#

  • Updated TEEHR to v0.2.2, including TEEHR-HUB

  • Updated the TEEHR-HUB baseimage to pangeo/pangeo-notebook:2023.07.05

0.2.1 - 2023-08-21#

Added#

  • Nothing

Changed#

  • Updated TEEHR version in TEEHR-HUB to v0.2.1

  • Converts nwm feature id’s to numpy array in loading

0.2.0 - 2023-08-17#

Added#

  • This changelog

Changed#

  • Loading directory refactor changed import paths to loading modules

  • Changed directory of generate_weights.py utility

  • Replaced NWM config parameter dictionary with pydantic models

  • NWM reference time used by TEEHR is now taken directly from the file name rather than the “reference time” embedded in the file

  • Use of the term run updated to configuration for NWM

0.1.3 - 2023-06-17#

Added#

  • Initial release

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