Class: SpecimenContainer
A vessel in which a specimen is held or to which it is attached - for storage or as a substrate for growth (e.g. a cell culture dish) or analysis (e.g. a microscope slide or 96-well plate)
classDiagram
class SpecimenContainer
Entity <|-- SpecimenContainer
SpecimenContainer : additive
SpecimenContainer --> Substance : additive
SpecimenContainer : container_number
SpecimenContainer : container_type
SpecimenContainer : id
SpecimenContainer : parent_container
SpecimenContainer --> SpecimenContainer : parent_container
Inheritance
- Entity
- SpecimenContainer
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
container_type | 0..1 String |
The kind of the container | direct |
container_number | 0..1 String |
Informal number by which the container is referenced or identified (e | direct |
additive | 0..* Substance |
A material substance added to the container (typically to support the primary... | direct |
parent_container | 0..1 SpecimenContainer |
A larger container of which this container is a part (e | direct |
id | 1..1 Uriorcurie |
The 'logical' identifier of the entity within the system of record | Entity |
Usages
used by | used in | type | used |
---|---|---|---|
Specimen | contained_in | range | SpecimenContainer |
SpecimenContainer | parent_container | range | SpecimenContainer |
SpecimenStorageActivity | container | range | SpecimenContainer |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nhlbidatastage/bdchm
Mappings
Mapping Type | Mapped Value |
---|---|
self | bdchm:SpecimenContainer |
native | bdchm:SpecimenContainer |
LinkML Source
Direct
name: SpecimenContainer
description: A vessel in which a specimen is held or to which it is attached - for
storage or as a substrate for growth (e.g. a cell culture dish) or analysis (e.g.
a microscope slide or 96-well plate)
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
container_type:
name: container_type
description: The kind of the container.
examples:
- value: Capillary blood collection tube
- value: Sputum specimen container
- value: Cell culture flask
- value: Glass slide
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
values_from:
- crdch:enum_CRDCH_SpecimenContainer_container_type
multivalued: false
range: string
required: false
container_number:
name: container_number
description: Informal number by which the container is referenced or identified
(e.g. a slide number, or a well number in a plate)
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: false
range: string
required: false
additive:
name: additive
description: A material substance added to the container (typically to support
the primary contained object - e.g. culture media to support cell growth)
examples:
- value: DMEM
- value: DMEM+Serum
- value: RPMI
- value: RPMI+Serum
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: true
range: Substance
required: false
parent_container:
name: parent_container
description: A larger container of which this container is a part (e.g. the complete
96-well plate of which a single well is a part)
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: false
range: SpecimenContainer
required: false
Induced
name: SpecimenContainer
description: A vessel in which a specimen is held or to which it is attached - for
storage or as a substrate for growth (e.g. a cell culture dish) or analysis (e.g.
a microscope slide or 96-well plate)
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
container_type:
name: container_type
description: The kind of the container.
examples:
- value: Capillary blood collection tube
- value: Sputum specimen container
- value: Cell culture flask
- value: Glass slide
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
values_from:
- crdch:enum_CRDCH_SpecimenContainer_container_type
multivalued: false
alias: container_type
owner: SpecimenContainer
domain_of:
- SpecimenContainer
range: string
required: false
container_number:
name: container_number
description: Informal number by which the container is referenced or identified
(e.g. a slide number, or a well number in a plate)
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: false
alias: container_number
owner: SpecimenContainer
domain_of:
- SpecimenContainer
range: string
required: false
additive:
name: additive
description: A material substance added to the container (typically to support
the primary contained object - e.g. culture media to support cell growth)
examples:
- value: DMEM
- value: DMEM+Serum
- value: RPMI
- value: RPMI+Serum
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: true
alias: additive
owner: SpecimenContainer
domain_of:
- SpecimenContainer
- SpecimenCreationActivity
- SpecimenProcessingActivity
range: Substance
required: false
parent_container:
name: parent_container
description: A larger container of which this container is a part (e.g. the complete
96-well plate of which a single well is a part)
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: false
alias: parent_container
owner: SpecimenContainer
domain_of:
- SpecimenContainer
range: SpecimenContainer
required: false
id:
name: id
description: The 'logical' identifier of the entity within the system of record. The
simple value of this attribute stands for an identifier of this data object
within the system, it can be used as a reference from other objects within the
same system (i.e. primary and foreign keys), and it should be unique per type
of object. The same data object copied to a different system will likely have
a different "id" in the new system since "id" values are system specific and
do not represent persistent business identifiers. Business identifiers are assigned
outside the information system and are captured in the "identifier" field. The
"id" field is more likely to be a serially or randomly generated value that
is assigned to the data object as it is created in a system.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
slot_uri: schema:identifier
identifier: true
alias: id
owner: SpecimenContainer
domain_of:
- Entity
range: uriorcurie
required: true