Class: DimensionalObservationSet
A set of one or more discrete observations about the physical dimensions of an object (e.g. length, width, area).
URI: bdchm:DimensionalObservationSet
classDiagram
class DimensionalObservationSet
Entity <|-- DimensionalObservationSet
DimensionalObservationSet : category
DimensionalObservationSet : id
DimensionalObservationSet : method_type
DimensionalObservationSet : observations
DimensionalObservationSet --> DimensionalObservation : observations
Inheritance
- Entity
- DimensionalObservationSet
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
category | 0..1 String |
The general category of observation set described | direct |
method_type | 0..* String |
A type of method used in generating each of the Observations bundled in the s... | direct |
observations | 0..* DimensionalObservation |
A set of one or more more atomic observations that are conceptually or logica... | direct |
id | 1..1 Uriorcurie |
The 'logical' identifier of the entity within the system of record | Entity |
Usages
used by | used in | type | used |
---|---|---|---|
Specimen | dimensional_measures | range | DimensionalObservationSet |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nhlbidatastage/bdchm
Mappings
Mapping Type | Mapped Value |
---|---|
self | bdchm:DimensionalObservationSet |
native | bdchm:DimensionalObservationSet |
LinkML Source
Direct
name: DimensionalObservationSet
description: A set of one or more discrete observations about the physical dimensions
of an object (e.g. length, width, area).
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
category:
name: category
description: The general category of observation set described
comments:
- FHIR naming conventions are followed here, where 'id' is used for logical identifiers
which are unique only within a given system, and 'identifier' for business identifiers,
which are used to connect entities or share content across systems. The complex
'Identifier' data type is used to capture the identifier itself, along with
metadata about its source.
from_schema: https://w3id.org/nhlbidatastage/bdchm
values_from:
- crdch:enum_CRDCH_DimensionalObservationSet_category
multivalued: false
range: string
required: false
method_type:
name: method_type
description: A type of method used in generating each of the Observations bundled
in the set.
comments:
- This may be a type of observational, measurement, experimental, or computational
method specifying how to generate data (e.g. 'manual counting', 'bright field
microscopy'). Or a Guideline or SOP specifying how to interpret data and/or
encode the result of an Observation (e.g. a Cancer Staging system such as that
defined by the AJCC, or variant interpretation guideline such as that provided
by the ACMG).
from_schema: https://w3id.org/nhlbidatastage/bdchm
values_from:
- crdch:enum_CRDCH_DimensionalObservationSet_method_type
multivalued: true
range: string
required: false
observations:
name: observations
description: A set of one or more more atomic observations that are conceptually
or logically related - e.g. two components of some compound measurement (e.g.
the systolic and diastolic components of a blood pressure measurement), or a
panel of related measurements run and interpreted together on the same subject/specimen
(e.g. a blood panel, or separate dimensional measurements of a specimen).
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: true
range: DimensionalObservation
required: false
inlined: true
inlined_as_list: true
Induced
name: DimensionalObservationSet
description: A set of one or more discrete observations about the physical dimensions
of an object (e.g. length, width, area).
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
category:
name: category
description: The general category of observation set described
comments:
- FHIR naming conventions are followed here, where 'id' is used for logical identifiers
which are unique only within a given system, and 'identifier' for business identifiers,
which are used to connect entities or share content across systems. The complex
'Identifier' data type is used to capture the identifier itself, along with
metadata about its source.
from_schema: https://w3id.org/nhlbidatastage/bdchm
values_from:
- crdch:enum_CRDCH_DimensionalObservationSet_category
multivalued: false
alias: category
owner: DimensionalObservationSet
domain_of:
- DimensionalObservation
- DimensionalObservationSet
range: string
required: false
method_type:
name: method_type
description: A type of method used in generating each of the Observations bundled
in the set.
comments:
- This may be a type of observational, measurement, experimental, or computational
method specifying how to generate data (e.g. 'manual counting', 'bright field
microscopy'). Or a Guideline or SOP specifying how to interpret data and/or
encode the result of an Observation (e.g. a Cancer Staging system such as that
defined by the AJCC, or variant interpretation guideline such as that provided
by the ACMG).
from_schema: https://w3id.org/nhlbidatastage/bdchm
values_from:
- crdch:enum_CRDCH_DimensionalObservationSet_method_type
multivalued: true
alias: method_type
owner: DimensionalObservationSet
domain_of:
- DimensionalObservation
- DimensionalObservationSet
- SpecimenQualityObservation
- SpecimenQuantityObservation
- SpecimenProcessingActivity
- SpecimenStorageActivity
range: string
required: false
observations:
name: observations
description: A set of one or more more atomic observations that are conceptually
or logically related - e.g. two components of some compound measurement (e.g.
the systolic and diastolic components of a blood pressure measurement), or a
panel of related measurements run and interpreted together on the same subject/specimen
(e.g. a blood panel, or separate dimensional measurements of a specimen).
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: true
alias: observations
owner: DimensionalObservationSet
domain_of:
- DimensionalObservationSet
range: DimensionalObservation
required: false
inlined: true
inlined_as_list: true
id:
name: id
description: The 'logical' identifier of the entity within the system of record. The
simple value of this attribute stands for an identifier of this data object
within the system, it can be used as a reference from other objects within the
same system (i.e. primary and foreign keys), and it should be unique per type
of object. The same data object copied to a different system will likely have
a different "id" in the new system since "id" values are system specific and
do not represent persistent business identifiers. Business identifiers are assigned
outside the information system and are captured in the "identifier" field. The
"id" field is more likely to be a serially or randomly generated value that
is assigned to the data object as it is created in a system.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
slot_uri: schema:identifier
identifier: true
alias: id
owner: DimensionalObservationSet
domain_of:
- Entity
range: uriorcurie
required: true