Class: BodySite
A site in the body of an organism, typically described in terms of an anatomical concept and optional qualifiers (e.g. left/right, upper/lower). But body sites as defined here may include non-canonical sites, such as an implanted medical device.
URI: bdchm:BodySite
classDiagram
class BodySite
Entity <|-- BodySite
BodySite : id
BodySite : qualifier
BodySite : site
Inheritance
- Entity
- BodySite
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
site | 1..1 String |
A term describing any site in the body | direct |
qualifier | 0..* String |
A qualifier that further refines or specifies the location of the body site -... | direct |
id | 1..1 Uriorcurie |
The 'logical' identifier of the entity within the system of record | Entity |
Usages
used by | used in | type | used |
---|---|---|---|
SpecimenCreationActivity | collection_site | range | BodySite |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nhlbidatastage/bdchm
Mappings
Mapping Type | Mapped Value |
---|---|
self | bdchm:BodySite |
native | bdchm:BodySite |
LinkML Source
Direct
name: BodySite
description: A site in the body of an organism, typically described in terms of an
anatomical concept and optional qualifiers (e.g. left/right, upper/lower). But body
sites as defined here may include non-canonical sites, such as an implanted medical
device.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
site:
name: site
description: A term describing any site in the body.
examples:
- value: Adenoid
- value: Adipose
- value: Adrenal
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
values_from:
- crdch:enum_CRDCH_BodySite_site
multivalued: false
range: string
required: true
qualifier:
name: qualifier
description: A qualifier that further refines or specifies the location of the
body site - e.g. to indicate laterality, upper v. lower, containment in some
other anatomical structure (e.g. 'blood' contained in the 'hepatic vein')
examples:
- value: left
- value: right
- value: bilateral
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
values_from:
- crdch:enum_CRDCH_BodySite_qualifier
multivalued: true
range: string
required: false
Induced
name: BodySite
description: A site in the body of an organism, typically described in terms of an
anatomical concept and optional qualifiers (e.g. left/right, upper/lower). But body
sites as defined here may include non-canonical sites, such as an implanted medical
device.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
site:
name: site
description: A term describing any site in the body.
examples:
- value: Adenoid
- value: Adipose
- value: Adrenal
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
values_from:
- crdch:enum_CRDCH_BodySite_site
multivalued: false
alias: site
owner: BodySite
domain_of:
- BodySite
range: string
required: true
qualifier:
name: qualifier
description: A qualifier that further refines or specifies the location of the
body site - e.g. to indicate laterality, upper v. lower, containment in some
other anatomical structure (e.g. 'blood' contained in the 'hepatic vein')
examples:
- value: left
- value: right
- value: bilateral
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
values_from:
- crdch:enum_CRDCH_BodySite_qualifier
multivalued: true
alias: qualifier
owner: BodySite
domain_of:
- BodySite
range: string
required: false
id:
name: id
description: The 'logical' identifier of the entity within the system of record. The
simple value of this attribute stands for an identifier of this data object
within the system, it can be used as a reference from other objects within the
same system (i.e. primary and foreign keys), and it should be unique per type
of object. The same data object copied to a different system will likely have
a different "id" in the new system since "id" values are system specific and
do not represent persistent business identifiers. Business identifiers are assigned
outside the information system and are captured in the "identifier" field. The
"id" field is more likely to be a serially or randomly generated value that
is assigned to the data object as it is created in a system.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
slot_uri: schema:identifier
identifier: true
alias: id
owner: BodySite
domain_of:
- Entity
range: uriorcurie
required: true