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Class: BodySite

A site in the body of an organism, typically described in terms of an anatomical concept and optional qualifiers (e.g. left/right, upper/lower). But body sites as defined here may include non-canonical sites, such as an implanted medical device.

URI: bdchm:BodySite

classDiagram class BodySite Entity <|-- BodySite BodySite : id BodySite : qualifier BodySite : site

Inheritance

Slots

Name Cardinality and Range Description Inheritance
site 1..1
String
A term describing any site in the body direct
qualifier 0..*
String
A qualifier that further refines or specifies the location of the body site -... direct
id 1..1
Uriorcurie
The 'logical' identifier of the entity within the system of record Entity

Usages

used by used in type used
SpecimenCreationActivity collection_site range BodySite

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/nhlbidatastage/bdchm

Mappings

Mapping Type Mapped Value
self bdchm:BodySite
native bdchm:BodySite

LinkML Source

Direct

name: BodySite
description: A site in the body of an organism, typically described in terms of an
  anatomical concept and optional qualifiers (e.g. left/right, upper/lower). But body
  sites as defined here may include non-canonical sites, such as an implanted medical
  device.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  site:
    name: site
    description: A term describing any site in the body.
    examples:
    - value: Adenoid
    - value: Adipose
    - value: Adrenal
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    values_from:
    - crdch:enum_CRDCH_BodySite_site
    multivalued: false
    range: string
    required: true
  qualifier:
    name: qualifier
    description: A qualifier that further refines or specifies the location of the
      body site - e.g. to indicate laterality, upper v. lower, containment in some
      other anatomical structure (e.g. 'blood' contained in the 'hepatic vein')
    examples:
    - value: left
    - value: right
    - value: bilateral
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    values_from:
    - crdch:enum_CRDCH_BodySite_qualifier
    multivalued: true
    range: string
    required: false

Induced

name: BodySite
description: A site in the body of an organism, typically described in terms of an
  anatomical concept and optional qualifiers (e.g. left/right, upper/lower). But body
  sites as defined here may include non-canonical sites, such as an implanted medical
  device.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  site:
    name: site
    description: A term describing any site in the body.
    examples:
    - value: Adenoid
    - value: Adipose
    - value: Adrenal
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    values_from:
    - crdch:enum_CRDCH_BodySite_site
    multivalued: false
    alias: site
    owner: BodySite
    domain_of:
    - BodySite
    range: string
    required: true
  qualifier:
    name: qualifier
    description: A qualifier that further refines or specifies the location of the
      body site - e.g. to indicate laterality, upper v. lower, containment in some
      other anatomical structure (e.g. 'blood' contained in the 'hepatic vein')
    examples:
    - value: left
    - value: right
    - value: bilateral
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    values_from:
    - crdch:enum_CRDCH_BodySite_qualifier
    multivalued: true
    alias: qualifier
    owner: BodySite
    domain_of:
    - BodySite
    range: string
    required: false
  id:
    name: id
    description: The 'logical' identifier of the entity within the system of record.  The
      simple value of this attribute stands for an identifier of this data object
      within the system, it can be used as a reference from other objects within the
      same system (i.e. primary and foreign keys), and it should be unique per type
      of object. The same data object copied to a different system will likely have
      a different "id" in the new system since "id" values are system specific and
      do not represent persistent business identifiers. Business identifiers are assigned
      outside the information system and are captured in the "identifier" field. The
      "id" field is more likely to be a serially or randomly generated value that
      is assigned to the data object as it is created in a system.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: BodySite
    domain_of:
    - Entity
    range: uriorcurie
    required: true