Class: BiologicProduct
A living organism, or a metabolically active biological system such as a cell culture, tissue culture, or organoid that is maintained or propagated in vitro.
classDiagram
class BiologicProduct
Entity <|-- BiologicProduct
BiologicProduct : description
BiologicProduct : growth_rate
BiologicProduct : id
BiologicProduct : identity
BiologicProduct --> Identifier : identity
BiologicProduct : passage_number
BiologicProduct : product_type
Inheritance
- Entity
- BiologicProduct
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
identity | 0..* Identifier |
A 'business' identifier or accession number for the entity, typically as prov... | direct |
description | 0..1 String |
A free text field to capture additional info/explanation about the model syst... | direct |
product_type | 0..1 String |
The high level type of model system (e | direct |
passage_number | 0..* Integer |
When the specimen an actively growing model system, such as a cell or tissue ... | direct |
growth_rate | 0..* String |
When the specimen an actively growing model system, such as a cell or tissue ... | direct |
id | 1..1 Uriorcurie |
The 'logical' identifier of the entity within the system of record | Entity |
Usages
used by | used in | type | used |
---|---|---|---|
Specimen | derived_product | range | BiologicProduct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nhlbidatastage/bdchm
Mappings
Mapping Type | Mapped Value |
---|---|
self | bdchm:BiologicProduct |
native | bdchm:BiologicProduct |
LinkML Source
Direct
name: BiologicProduct
description: A living organism, or a metabolically active biological system such as
a cell culture, tissue culture, or organoid that is maintained or propagated in
vitro.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
slots:
- identity
attributes:
description:
name: description
description: A free text field to capture additional info/explanation about the
model system
from_schema: https://w3id.org/nhlbidatastage/bdchm
multivalued: false
range: string
required: false
product_type:
name: product_type
description: The high level type of model system (e.g. cell line, cell culture,
tissue culture, organoid)
examples:
- value: cell line
- value: cell culture
- value: tissue culture
- value: organoid
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
values_from:
- crdch:enum_CRDCH_BiologicProduct_product_type
multivalued: false
range: string
required: false
passage_number:
name: passage_number
description: When the specimen an actively growing model system, such as a cell
or tissue culture, this property captures its passage number.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: true
range: integer
required: false
growth_rate:
name: growth_rate
description: When the specimen an actively growing model system, such as a cell
or tissue culture, this property captures its rate of growth.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: true
range: string
required: false
Induced
name: BiologicProduct
description: A living organism, or a metabolically active biological system such as
a cell culture, tissue culture, or organoid that is maintained or propagated in
vitro.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
description:
name: description
description: A free text field to capture additional info/explanation about the
model system
from_schema: https://w3id.org/nhlbidatastage/bdchm
multivalued: false
alias: description
owner: BiologicProduct
domain_of:
- Participant
- ResearchStudy
- Questionnaire
- Document
- Specimen
- BiologicProduct
range: string
required: false
product_type:
name: product_type
description: The high level type of model system (e.g. cell line, cell culture,
tissue culture, organoid)
examples:
- value: cell line
- value: cell culture
- value: tissue culture
- value: organoid
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
values_from:
- crdch:enum_CRDCH_BiologicProduct_product_type
multivalued: false
alias: product_type
owner: BiologicProduct
domain_of:
- BiologicProduct
range: string
required: false
passage_number:
name: passage_number
description: When the specimen an actively growing model system, such as a cell
or tissue culture, this property captures its passage number.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: true
alias: passage_number
owner: BiologicProduct
domain_of:
- BiologicProduct
range: integer
required: false
growth_rate:
name: growth_rate
description: When the specimen an actively growing model system, such as a cell
or tissue culture, this property captures its rate of growth.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
multivalued: true
alias: growth_rate
owner: BiologicProduct
domain_of:
- BiologicProduct
range: string
required: false
identity:
name: identity
description: A 'business' identifier or accession number for the entity, typically
as provided by an external system or authority, that are globally unique and
persist across implementing systems. Also, since these identifiers are created
outside the information system through a specific business process, the Identifier
type has additional attributes to capture this additional metadata so the actual
identifier values are qualified by the context that created those values. This
additional context allows "identifier" instances to be transmitted as business
data across systems while still being able to trace them back to the system
of origin.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
slot_uri: schema:identifier
multivalued: true
alias: identity
owner: BiologicProduct
domain_of:
- Person
- Demography
- Participant
- ResearchStudy
- Organization
- Questionnaire
- QuestionnaireItem
- Condition
- Document
- Specimen
- BiologicProduct
range: Identifier
id:
name: id
description: The 'logical' identifier of the entity within the system of record. The
simple value of this attribute stands for an identifier of this data object
within the system, it can be used as a reference from other objects within the
same system (i.e. primary and foreign keys), and it should be unique per type
of object. The same data object copied to a different system will likely have
a different "id" in the new system since "id" values are system specific and
do not represent persistent business identifiers. Business identifiers are assigned
outside the information system and are captured in the "identifier" field. The
"id" field is more likely to be a serially or randomly generated value that
is assigned to the data object as it is created in a system.
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
slot_uri: schema:identifier
identifier: true
alias: id
owner: BiologicProduct
domain_of:
- Entity
range: uriorcurie
required: true