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Class: BiologicProduct

A living organism, or a metabolically active biological system such as a cell culture, tissue culture, or organoid that is maintained or propagated in vitro.

URI: bdchm:BiologicProduct

classDiagram class BiologicProduct Entity <|-- BiologicProduct BiologicProduct : description BiologicProduct : growth_rate BiologicProduct : id BiologicProduct : identity BiologicProduct --> Identifier : identity BiologicProduct : passage_number BiologicProduct : product_type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
identity 0..*
Identifier
A 'business' identifier or accession number for the entity, typically as prov... direct
description 0..1
String
A free text field to capture additional info/explanation about the model syst... direct
product_type 0..1
String
The high level type of model system (e direct
passage_number 0..*
Integer
When the specimen an actively growing model system, such as a cell or tissue ... direct
growth_rate 0..*
String
When the specimen an actively growing model system, such as a cell or tissue ... direct
id 1..1
Uriorcurie
The 'logical' identifier of the entity within the system of record Entity

Usages

used by used in type used
Specimen derived_product range BiologicProduct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/nhlbidatastage/bdchm

Mappings

Mapping Type Mapped Value
self bdchm:BiologicProduct
native bdchm:BiologicProduct

LinkML Source

Direct

name: BiologicProduct
description: A living organism, or a metabolically active biological system such as
  a cell culture, tissue culture, or organoid that is maintained or propagated in
  vitro.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
slots:
- identity
attributes:
  description:
    name: description
    description: A free text field to capture additional info/explanation about the
      model system
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    range: string
    required: false
  product_type:
    name: product_type
    description: The high level type of model system (e.g. cell line, cell culture,
      tissue culture, organoid)
    examples:
    - value: cell line
    - value: cell culture
    - value: tissue culture
    - value: organoid
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    values_from:
    - crdch:enum_CRDCH_BiologicProduct_product_type
    multivalued: false
    range: string
    required: false
  passage_number:
    name: passage_number
    description: When the specimen an actively growing model system, such as a cell
      or tissue culture, this property captures its passage number.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: true
    range: integer
    required: false
  growth_rate:
    name: growth_rate
    description: When the specimen an actively growing model system, such as a cell
      or tissue culture, this property captures its rate of growth.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: true
    range: string
    required: false

Induced

name: BiologicProduct
description: A living organism, or a metabolically active biological system such as
  a cell culture, tissue culture, or organoid that is maintained or propagated in
  vitro.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  description:
    name: description
    description: A free text field to capture additional info/explanation about the
      model system
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    alias: description
    owner: BiologicProduct
    domain_of:
    - Participant
    - ResearchStudy
    - Questionnaire
    - Document
    - Specimen
    - BiologicProduct
    range: string
    required: false
  product_type:
    name: product_type
    description: The high level type of model system (e.g. cell line, cell culture,
      tissue culture, organoid)
    examples:
    - value: cell line
    - value: cell culture
    - value: tissue culture
    - value: organoid
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    values_from:
    - crdch:enum_CRDCH_BiologicProduct_product_type
    multivalued: false
    alias: product_type
    owner: BiologicProduct
    domain_of:
    - BiologicProduct
    range: string
    required: false
  passage_number:
    name: passage_number
    description: When the specimen an actively growing model system, such as a cell
      or tissue culture, this property captures its passage number.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: true
    alias: passage_number
    owner: BiologicProduct
    domain_of:
    - BiologicProduct
    range: integer
    required: false
  growth_rate:
    name: growth_rate
    description: When the specimen an actively growing model system, such as a cell
      or tissue culture, this property captures its rate of growth.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: true
    alias: growth_rate
    owner: BiologicProduct
    domain_of:
    - BiologicProduct
    range: string
    required: false
  identity:
    name: identity
    description: A 'business' identifier or accession number for the entity, typically
      as provided by an external system or authority, that are globally unique and
      persist across implementing systems. Also, since these identifiers are created
      outside the information system through a specific business process, the Identifier
      type has additional attributes to capture this additional metadata so the actual
      identifier values are qualified by the context that created those values. This
      additional context allows "identifier" instances to be transmitted as business
      data across systems while still being able to trace them back to the system
      of origin.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    slot_uri: schema:identifier
    multivalued: true
    alias: identity
    owner: BiologicProduct
    domain_of:
    - Person
    - Demography
    - Participant
    - ResearchStudy
    - Organization
    - Questionnaire
    - QuestionnaireItem
    - Condition
    - Document
    - Specimen
    - BiologicProduct
    range: Identifier
  id:
    name: id
    description: The 'logical' identifier of the entity within the system of record.  The
      simple value of this attribute stands for an identifier of this data object
      within the system, it can be used as a reference from other objects within the
      same system (i.e. primary and foreign keys), and it should be unique per type
      of object. The same data object copied to a different system will likely have
      a different "id" in the new system since "id" values are system specific and
      do not represent persistent business identifiers. Business identifiers are assigned
      outside the information system and are captured in the "identifier" field. The
      "id" field is more likely to be a serially or randomly generated value that
      is assigned to the data object as it is created in a system.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: BiologicProduct
    domain_of:
    - Entity
    range: uriorcurie
    required: true